Class for handling inclusions in an immersed boundary method. More...

#include <inclusions.h>

Inheritance diagram for Inclusions< spacedim >:

Public Member Functions
	Inclusions (const unsigned int n_vector_components=1)
	Class for computing the inclusions of a given mesh.

types::global_dof_index	n_dofs () const

types::global_dof_index	n_particles () const

types::global_dof_index	n_inclusions () const
	Returns the number of inclusions in the mesh.

unsigned int	n_dofs_per_inclusion () const
	Number of degrees of freedom associated to each inclusion.

void	initialize ()

std::vector< types::global_dof_index >	get_dof_indices (const types::global_dof_index &quadrature_id) const
	Returns the degrees of freedom indices associated with a given quadrature point.

void	setup_inclusions_particles (const parallel::distributed::Triangulation< spacedim > &tria)
	Sets up the inclusions particles for the given triangulation.

types::global_dof_index	get_inclusion_id (const types::global_dof_index &quadrature_id) const

unsigned int	get_component (const types::global_dof_index &dof_index) const
	Get the ith component for the given dof index.

unsigned int	get_fourier_component (const types::global_dof_index &dof_index) const
	Get the ith Fourier component for the given dof index.

double	get_inclusion_data (const types::global_dof_index &inclusion_id, const types::global_dof_index &dof_index) const
	Get the Fourier data for the given local dof index.

double	get_inclusion_data (const types::global_dof_index &inclusion_id, const types::global_dof_index &dof_index, const Point< spacedim > &point) const
	Get the Fourier data for the given local dof index.

const Tensor< 1, spacedim > &	get_normal (const types::global_dof_index &quadrature_id) const
	Get the normal.

double	get_JxW (const types::global_dof_index &particle_id) const
	return weight for integration normal direction of an inclusion at a quadrature point

const std::vector< double > &	get_fe_values (const types::global_dof_index particle_id) const

Point< spacedim >	get_center (const types::global_dof_index &inclusion_id) const
	Get the center of the inclusion.

double	get_radius (const types::global_dof_index &inclusion_id) const
	Get the radius of the inclusion.

double	get_section_measure (const types::global_dof_index &inclusion_id) const
	Get the measure of the section of the inclusion.

Tensor< 1, spacedim >	get_direction (const types::global_dof_index &inclusion_id) const
	Get the direction of the inclusion.

Tensor< 2, spacedim >	get_rotation (const types::global_dof_index &inclusion_id) const
	Get the rotation of the inclusion.

const std::vector< Point< spacedim > > &	get_current_support_points (const types::global_dof_index &inclusion_id) const

void	output_particles (const std::string &filename) const
	print the inclusions in parallel on a .vtu file

void	update_displacement_hdf5 ()
	Update the displacement data after the initialization reading from a hdf5 file.

void	update_inclusions_data (std::vector< double > new_data)
	Update the displacement data after the initialization, 3D case only.

void	update_inclusions_data (std::vector< std::vector< double > > new_data)

int	get_vesselID (const types::global_dof_index &inclusion_id) const
	3D return the vessel that a given inclusion belongs to, 2D return 0

void	update_single_inclusion_data_along_normal (const types::global_dof_index &inclusion_id, const double nd)

void	update_single_vessel_data (const types::global_dof_index &, const std::vector< double >)

unsigned int	get_n_vessels () const

unsigned int	get_n_coefficients () const

unsigned int	get_offset_coefficients () const

unsigned int	get_inclusions_in_vessel (unsigned int vessel_id) const

void	compute_rotated_inclusion_data ()

std::vector< double >	get_rotated_inclusion_data (const types::global_dof_index &inclusion_id) const
	return the rotate the data of a given inclusion

void	set_n_q_points (unsigned int n_q)

void	set_n_coefficients (unsigned int n_coefficients)

Public Member Functions inherited from ParameterAcceptor
	ParameterAcceptor (const std::string &section_name="")

unsigned int	get_acceptor_id () const

virtual	~ParameterAcceptor () override

virtual void	declare_parameters (ParameterHandler &prm)

virtual void	parse_parameters (ParameterHandler &prm)

std::string	get_section_name () const

std::vector< std::string >	get_section_path () const

void	add_parameter (const std::string &entry, ParameterType &parameter, const std::string &documentation="", ParameterHandler &prm_=prm, const Patterns::PatternBase &pattern=*Patterns::Tools::Convert< ParameterType >::to_pattern())

void	enter_subsection (const std::string &subsection)

void	leave_subsection ()

void	enter_my_subsection (ParameterHandler &prm)

void	leave_my_subsection (ParameterHandler &prm)

void	serialize (Archive &ar, const unsigned int version)

unsigned int	n_subscriptions () const

void	list_subscribers (StreamType &stream) const

void	list_subscribers () const

unsigned int	n_subscriptions () const

void	list_subscribers (StreamType &stream) const

void	list_subscribers () const

Public Member Functions inherited from EnableObserverPointer
	EnableObserverPointer ()

	EnableObserverPointer (const EnableObserverPointer &)

	EnableObserverPointer (EnableObserverPointer &&) noexcept

virtual	~EnableObserverPointer ()

EnableObserverPointer &	operator= (const EnableObserverPointer &)

EnableObserverPointer &	operator= (EnableObserverPointer &&) noexcept

void	serialize (Archive &ar, const unsigned int version)

unsigned int	n_subscriptions () const

void	list_subscribers (StreamType &stream) const

void	list_subscribers () const

unsigned int	n_subscriptions () const

void	list_subscribers (StreamType &stream) const

void	list_subscribers () const

Public Attributes
ParameterAcceptorProxy< Functions::ParsedFunction< spacedim > >	inclusions_rhs

Particles::ParticleHandler< spacedim >	inclusions_as_particles

std::vector< std::vector< double > >	inclusions

std::string	data_file = ""

std::vector< std::vector< double > >	inclusions_data

std::vector< double >	reference_inclusion_data

std::vector< std::vector< double > >	rotated_inclusion_data

std::map< unsigned int, std::vector< types::global_dof_index > >	map_vessel_inclusions

Public Attributes inherited from ParameterAcceptor
boost::signals2::signal< void()>	declare_parameters_call_back

boost::signals2::signal< void()>	parse_parameters_call_back

Private Member Functions
void	check_vessels ()
	Check that all vesselsID are present and create the map vessel_inclusions.

Private Attributes
unsigned int	n_q_points = 100

unsigned int	n_coefficients = 1

unsigned int	offset_coefficients = 0

std::vector< unsigned int >	selected_coefficients

const unsigned int	n_vector_components

MPI_Comm	mpi_communicator

std::vector< Point< spacedim > >	support_points

std::vector< double >	theta

std::vector< Tensor< 1, spacedim > >	normals

std::vector< Point< spacedim > >	current_support_points

std::vector< double >	current_fe_values

unsigned int	n_vessels = 1

std::string	inclusions_file = ""

unsigned int	rtree_extraction_level = 1

Friends
template<int dim, typename number, int n_components>
class	CouplingOperator

Additional Inherited Members
Static Public Member Functions inherited from ParameterAcceptor
static void	initialize (const std::string &filename="", const std::string &output_filename="", const ParameterHandler::OutputStyle output_style_for_output_filename=ParameterHandler::Short, ParameterHandler &prm=ParameterAcceptor::prm, const ParameterHandler::OutputStyle output_style_for_filename=ParameterHandler::DefaultStyle)

static void	initialize (std::istream &input_stream, ParameterHandler &prm=ParameterAcceptor::prm)

static void	clear ()

static void	parse_all_parameters (ParameterHandler &prm=ParameterAcceptor::prm)

static void	declare_all_parameters (ParameterHandler &prm=ParameterAcceptor::prm)

static ::ExceptionBase &	ExcInUse (int arg1, std::string arg2, std::string arg3)

static ::ExceptionBase &	ExcNoSubscriber (std::string arg1, std::string arg2)

Static Public Member Functions inherited from EnableObserverPointer
static ::ExceptionBase &	ExcInUse (int arg1, std::string arg2, std::string arg3)

static ::ExceptionBase &	ExcNoSubscriber (std::string arg1, std::string arg2)

Static Public Attributes inherited from ParameterAcceptor
static ParameterHandler	prm

Protected Attributes inherited from ParameterAcceptor
const std::string	section_name

std::vector< std::string >	subsections

Detailed Description

template<int spacedim>
class Inclusions< spacedim >

Class for handling inclusions in an immersed boundary method.

This class provides functionality for handling inclusions in an immersed boundary method. It stores the positions, radii, and Fourier coefficients of the inclusions, and provides methods for computing their normals, center, and direction. It also provides methods for initializing the inclusions from a file, setting up particles for the inclusions, and getting degrees of freedom associated with each inclusion.

Definition at line 64 of file inclusions.h.

Constructor & Destructor Documentation

◆ Inclusions()

template<int spacedim>

Inclusions< spacedim >::Inclusions ( const unsigned int n_vector_components = 1 )

inline

Class for computing the inclusions of a given mesh.

Parameters

n_vector_components Number of vector components.

Definition at line 75 of file inclusions.h.

References ParameterAcceptor::add_parameter(), data_file, inclusions, inclusions_file, inclusions_rhs, n_coefficients, n_q_points, n_vector_components, ParameterAcceptor::ParameterAcceptor(), ParameterAcceptor::prm, reference_inclusion_data, rtree_extraction_level, and selected_coefficients.

Member Function Documentation

◆ check_vessels()

template<int spacedim>

void Inclusions< spacedim >::check_vessels ( )

inlineprivate

Check that all vesselsID are present and create the map vessel_inclusions.

Definition at line 1065 of file inclusions.h.

References get_vesselID(), inclusions, map_vessel_inclusions, and n_vessels.

Referenced by initialize().

◆ compute_rotated_inclusion_data()

template<int spacedim>

void Inclusions< spacedim >::compute_rotated_inclusion_data ( )

inline

Definition at line 941 of file inclusions.h.

References get_rotation(), inclusions_data, rotated_inclusion_data, and Tensor< int rank_, int dim, typename Number >::unroll().

◆ get_center()

template<int spacedim>

Point< spacedim > Inclusions< spacedim >::get_center ( const types::global_dof_index & inclusion_id ) const

inline

Get the center of the inclusion.

Parameters

inclusion_id

Returns: Point<spacedim>

Definition at line 551 of file inclusions.h.

References inclusions.

Referenced by get_current_support_points().

◆ get_component()

template<int spacedim>

unsigned int Inclusions< spacedim >::get_component ( const types::global_dof_index & dof_index ) const

inline

Get the ith component for the given dof index.

Parameters

dof_index A number in [0,n_dofs())

Returns: unsigned int The index of the current component

Definition at line 366 of file inclusions.h.

References n_dofs(), n_dofs_per_inclusion(), n_vector_components, and selected_coefficients.

◆ get_current_support_points()

template<int spacedim>

const std::vector< Point< spacedim > > & Inclusions< spacedim >::get_current_support_points ( const types::global_dof_index & inclusion_id ) const

inline

Definition at line 683 of file inclusions.h.

References current_support_points, get_center(), get_radius(), get_rotation(), n_q_points, and support_points.

Referenced by setup_inclusions_particles().

◆ get_direction()

template<int spacedim>

Tensor< 1, spacedim > Inclusions< spacedim >::get_direction ( const types::global_dof_index & inclusion_id ) const

inline

Get the direction of the inclusion.

Parameters

inclusion_id

Returns: Tensor<1, spacedim>

Definition at line 613 of file inclusions.h.

References inclusions, and Tensor< int rank_, int dim, typename Number >::norm().

Referenced by get_JxW(), get_rotation(), and get_section_measure().

◆ get_dof_indices()

template<int spacedim>

std::vector< types::global_dof_index > Inclusions< spacedim >::get_dof_indices ( const types::global_dof_index & quadrature_id ) const

inline

Returns the degrees of freedom indices associated with a given quadrature point.

Parameters

quadrature_id The global index of the quadrature point.

Returns: A vector containing the degrees of freedom indices.

Definition at line 277 of file inclusions.h.

References n_dofs_per_inclusion(), n_particles(), and n_q_points.

◆ get_fe_values()

template<int spacedim>

const std::vector< double > & Inclusions< spacedim >::get_fe_values ( const types::global_dof_index particle_id ) const

inline

Get a list of fe values

Parameters

particle_id

Returns: const std::vector<double>&

Definition at line 492 of file inclusions.h.

References std::cos(), current_fe_values, get_radius(), inclusions, n_coefficients, n_particles(), n_q_points, n_vector_components, selected_coefficients, std::sin(), std::sqrt(), and theta.

◆ get_fourier_component()

template<int spacedim>

unsigned int Inclusions< spacedim >::get_fourier_component ( const types::global_dof_index & dof_index ) const

inline

Get the ith Fourier component for the given dof index.

Parameters

dof_index A number in [0,n_dofs())

Returns: unsigned int The index of the current component

Definition at line 382 of file inclusions.h.

References n_dofs(), n_dofs_per_inclusion(), and selected_coefficients.

Referenced by get_inclusion_data(), and get_inclusion_data().

◆ get_inclusion_data() [1/2]

template<int spacedim>

double Inclusions< spacedim >::get_inclusion_data	(	const types::global_dof_index &	inclusion_id,
		const types::global_dof_index &	dof_index ) const

inline

Get the Fourier data for the given local dof index.

Parameters

inclusion_id	A number in [0,n_inclusions())
dof_index	A number in [0,n_dofs_per_inclusion())

Returns: unsigned int The index of the current component

Definition at line 398 of file inclusions.h.

References get_fourier_component(), get_rotated_inclusion_data(), n_dofs(), and n_inclusions().

◆ get_inclusion_data() [2/2]

template<int spacedim>

double Inclusions< spacedim >::get_inclusion_data	(	const types::global_dof_index &	inclusion_id,
		const types::global_dof_index &	dof_index,
		const Point< spacedim > &	point ) const

inline

Get the Fourier data for the given local dof index.

Parameters

inclusion_id	A number in [0,n_inclusions())
dof_index	A number in [0,n_dofs_per_inclusion())
point	The inclusion quadrature point location

Returns: unsigned int The index of the current component

Definition at line 417 of file inclusions.h.

References get_fourier_component(), get_rotated_inclusion_data(), inclusions_data, inclusions_rhs, n_dofs(), n_inclusions(), and n_vector_components.

◆ get_inclusion_id()

template<int spacedim>

types::global_dof_index Inclusions< spacedim >::get_inclusion_id ( const types::global_dof_index & quadrature_id ) const

inline

Quadrature id to inclusion id.

Parameters

quadrature_id

Returns: const types::global_dof_index

Definition at line 353 of file inclusions.h.

References n_particles(), and n_q_points.

Referenced by get_normal().

◆ get_inclusions_in_vessel()

template<int spacedim>

unsigned int Inclusions< spacedim >::get_inclusions_in_vessel ( unsigned int vessel_id ) const

inline

Definition at line 933 of file inclusions.h.

References map_vessel_inclusions, and n_vessels.

◆ get_JxW()

template<int spacedim>

double Inclusions< spacedim >::get_JxW ( const types::global_dof_index & particle_id ) const

inline

return weight for integration normal direction of an inclusion at a quadrature point

Parameters

quadrature_id

Returns: const Tensor<1, spacedim>&

Definition at line 475 of file inclusions.h.

References get_direction(), get_radius(), inclusions, n_particles(), n_q_points, Tensor< int rank_, int dim, typename Number >::norm(), and numbers::PI.

◆ get_n_coefficients()

template<int spacedim>

unsigned int Inclusions< spacedim >::get_n_coefficients ( ) const

inline

Definition at line 921 of file inclusions.h.

References n_coefficients.

◆ get_n_vessels()

template<int spacedim>

unsigned int Inclusions< spacedim >::get_n_vessels ( ) const

inline

Definition at line 915 of file inclusions.h.

References n_vessels.

◆ get_normal()

template<int spacedim>

const Tensor< 1, spacedim > & Inclusions< spacedim >::get_normal ( const types::global_dof_index & quadrature_id ) const

inline

Get the normal.

Parameters

quadrature_id

Returns: const Tensor<1, spacedim>&

Definition at line 455 of file inclusions.h.

References get_inclusion_id(), get_rotation(), n_particles(), n_q_points, and normals.

◆ get_offset_coefficients()

template<int spacedim>

unsigned int Inclusions< spacedim >::get_offset_coefficients ( ) const

inline

Definition at line 927 of file inclusions.h.

References offset_coefficients.

◆ get_radius()

template<int spacedim>

double Inclusions< spacedim >::get_radius ( const types::global_dof_index & inclusion_id ) const

inline

Get the radius of the inclusion.

Parameters

inclusion_id

Returns: double

Definition at line 570 of file inclusions.h.

References inclusions.

Referenced by get_current_support_points(), get_fe_values(), get_JxW(), and get_section_measure().

◆ get_rotated_inclusion_data()

template<int spacedim>

std::vector< double > Inclusions< spacedim >::get_rotated_inclusion_data ( const types::global_dof_index & inclusion_id ) const

inline

return the rotate the data of a given inclusion

Parameters

inclusion_id

Returns: std::vector<double> rotated data

Definition at line 999 of file inclusions.h.

References inclusions, inclusions_data, and rotated_inclusion_data.

Referenced by get_inclusion_data(), and get_inclusion_data().

◆ get_rotation()

template<int spacedim>

Tensor< 2, spacedim > Inclusions< spacedim >::get_rotation ( const types::global_dof_index & inclusion_id ) const

inline

Get the rotation of the inclusion.

Parameters

inclusion_id

Returns: Tensor<2, spacedim>

Definition at line 644 of file inclusions.h.

References std::abs(), and get_direction().

Referenced by compute_rotated_inclusion_data(), get_current_support_points(), and get_normal().

◆ get_section_measure()

template<int spacedim>

double Inclusions< spacedim >::get_section_measure ( const types::global_dof_index & inclusion_id ) const

inline

Get the measure of the section of the inclusion.

Parameters

inclusion_id

Returns: double

Definition at line 593 of file inclusions.h.

References get_direction(), get_radius(), Tensor< int rank_, int dim, typename Number >::norm(), and numbers::PI.

◆ get_vesselID()

template<int spacedim>

int Inclusions< spacedim >::get_vesselID ( const types::global_dof_index & inclusion_id ) const

inline

3D return the vessel that a given inclusion belongs to, 2D return 0

Parameters

inclusion_id

Returns: unsigned int of vessel id

Definition at line 871 of file inclusions.h.

References inclusions.

Referenced by check_vessels().

◆ initialize()

template<int spacedim>

void Inclusions< spacedim >::initialize ( )

inline

Reinit all reference points and normals, and read inclusions file.

Definition at line 168 of file inclusions.h.

References check_vessels(), std::cos(), current_fe_values, current_support_points, data_file, inclusions, inclusions_data, inclusions_file, mpi_communicator, n_coefficients, n_dofs_per_inclusion(), n_inclusions(), n_q_points, n_vector_components, normals, numbers::PI, reference_inclusion_data, selected_coefficients, std::sin(), support_points, theta, and Utilities::MPI::this_mpi_process().

Referenced by setup_inclusions_particles().

◆ n_dofs()

template<int spacedim>

types::global_dof_index Inclusions< spacedim >::n_dofs ( ) const

inline

Returns the number of degrees of freedom in the system.

Returns: The number of degrees of freedom.

Definition at line 123 of file inclusions.h.

References inclusions, and n_dofs_per_inclusion().

Referenced by get_component(), get_fourier_component(), get_inclusion_data(), get_inclusion_data(), and setup_inclusions_particles().

◆ n_dofs_per_inclusion()

template<int spacedim>

unsigned int Inclusions< spacedim >::n_dofs_per_inclusion ( ) const

inline

Number of degrees of freedom associated to each inclusion.

Returns: unsigned int

Definition at line 158 of file inclusions.h.

References selected_coefficients.

Referenced by get_component(), get_dof_indices(), get_fourier_component(), initialize(), and n_dofs().

◆ n_inclusions()

template<int spacedim>

types::global_dof_index Inclusions< spacedim >::n_inclusions ( ) const

inline

Returns the number of inclusions in the mesh.

Returns: The number of inclusions in the mesh.

Definition at line 147 of file inclusions.h.

References inclusions.

Referenced by get_inclusion_data(), get_inclusion_data(), initialize(), setup_inclusions_particles(), and update_displacement_hdf5().

◆ n_particles()

template<int spacedim>

types::global_dof_index Inclusions< spacedim >::n_particles ( ) const

inline

Returns the number of particles in the system.

Returns: The number of particles in the system.

Definition at line 135 of file inclusions.h.

References inclusions, and n_q_points.

Referenced by get_dof_indices(), get_fe_values(), get_inclusion_id(), get_JxW(), get_normal(), and setup_inclusions_particles().

◆ output_particles()

template<int spacedim>

void Inclusions< spacedim >::output_particles ( const std::string & filename ) const

inline

print the inclusions in parallel on a .vtu file

Parameters

filename

Definition at line 702 of file inclusions.h.

References Particles::DataOut< int dim, int spacedim >::build_patches(), inclusions_as_particles, mpi_communicator, and Particles::DataOut< int dim, int spacedim >::write_vtu_in_parallel().

◆ set_n_coefficients()

template<int spacedim>

void Inclusions< spacedim >::set_n_coefficients ( unsigned int n_coefficients )

inline

Definition at line 1018 of file inclusions.h.

References n_coefficients.

◆ set_n_q_points()

template<int spacedim>

void Inclusions< spacedim >::set_n_q_points ( unsigned int n_q )

inline

Definition at line 1011 of file inclusions.h.

References n_q_points.

◆ setup_inclusions_particles()

template<int spacedim>

void Inclusions< spacedim >::setup_inclusions_particles ( const parallel::distributed::Triangulation< spacedim > & tria )

inline

Sets up the inclusions particles for the given triangulation.

Parameters

tria	The triangulation to set up the inclusions particles for.

Definition at line 293 of file inclusions.h.

References parallel::distributed::Triangulation< int dim, int spacedim >::active_cell_iterators(), Utilities::MPI::all_gather(), Utilities::MPI::create_evenly_distributed_partitioning(), parallel::distributed::Triangulation< int dim, int spacedim >::get_communicator(), get_current_support_points(), inclusions_as_particles, initialize(), StaticMappingQ1< int dim, int spacedim >::mapping, mpi_communicator, n_dofs(), n_inclusions(), parallel::distributed::Triangulation< int dim, int spacedim >::n_locally_owned_active_cells(), n_particles(), and rtree_extraction_level.

◆ update_displacement_hdf5()

template<int spacedim>

void Inclusions< spacedim >::update_displacement_hdf5 ( )

inline

Update the displacement data after the initialization reading from a hdf5 file.

Definition at line 713 of file inclusions.h.

References Utilities::MPI::create_evenly_distributed_partitioning(), data_file, inclusions_data, mpi_communicator, and n_inclusions().

◆ update_inclusions_data() [1/2]

template<int spacedim>

void Inclusions< spacedim >::update_inclusions_data ( std::vector< double > new_data )

inline

Update the displacement data after the initialization, 3D case only.

Parameters

new_data vector of lenght equal to the number of inclusions or to the number of vessels, elements of the vector are the new values to be assigned for normal expansion

Definition at line 759 of file inclusions.h.

References inclusions, map_vessel_inclusions, n_vessels, and update_single_inclusion_data_along_normal().

◆ update_inclusions_data() [2/2]

template<int spacedim>

void Inclusions< spacedim >::update_inclusions_data ( std::vector< std::vector< double > > new_data )

inline

Definition at line 795 of file inclusions.h.

References map_vessel_inclusions, n_vessels, and update_single_inclusion_data_along_normal().

◆ update_single_inclusion_data_along_normal()

template<int spacedim>

void Inclusions< spacedim >::update_single_inclusion_data_along_normal	(	const types::global_dof_index &	inclusion_id,
		const double	nd )

inline

Definition at line 887 of file inclusions.h.

References inclusions_data.

Referenced by update_inclusions_data(), and update_inclusions_data().

◆ update_single_vessel_data()

template<int spacedim>

void Inclusions< spacedim >::update_single_vessel_data	(	const types::global_dof_index &	,
		const std::vector< double >	)

inline

Definition at line 910 of file inclusions.h.

Friends And Related Symbol Documentation

◆ CouplingOperator

template<int spacedim>

template<int dim, typename number, int n_components>

friend class CouplingOperator

friend

Definition at line 68 of file inclusions.h.

References CouplingOperator.

Referenced by CouplingOperator.

Member Data Documentation

◆ current_fe_values

template<int spacedim>

std::vector<double> Inclusions< spacedim >::current_fe_values

mutableprivate

Definition at line 1053 of file inclusions.h.

Referenced by get_fe_values(), and initialize().

◆ current_support_points

template<int spacedim>

std::vector<Point<spacedim> > Inclusions< spacedim >::current_support_points

mutableprivate

Definition at line 1052 of file inclusions.h.

Referenced by get_current_support_points(), and initialize().

◆ data_file

template<int spacedim>

std::string Inclusions< spacedim >::data_file = ""

Definition at line 1028 of file inclusions.h.

Referenced by Inclusions(), initialize(), and update_displacement_hdf5().

◆ inclusions

template<int spacedim>

std::vector<std::vector<double> > Inclusions< spacedim >::inclusions

Definition at line 1026 of file inclusions.h.

Referenced by check_vessels(), get_center(), get_direction(), get_fe_values(), get_JxW(), get_radius(), get_rotated_inclusion_data(), get_vesselID(), Inclusions(), initialize(), n_dofs(), n_inclusions(), n_particles(), and update_inclusions_data().

◆ inclusions_as_particles

template<int spacedim>

Particles::ParticleHandler<spacedim> Inclusions< spacedim >::inclusions_as_particles

Definition at line 1025 of file inclusions.h.

Referenced by output_particles(), and setup_inclusions_particles().

◆ inclusions_data

template<int spacedim>

std::vector<std::vector<double> > Inclusions< spacedim >::inclusions_data

Definition at line 1032 of file inclusions.h.

Referenced by compute_rotated_inclusion_data(), get_inclusion_data(), get_rotated_inclusion_data(), initialize(), update_displacement_hdf5(), and update_single_inclusion_data_along_normal().

◆ inclusions_file

template<int spacedim>

std::string Inclusions< spacedim >::inclusions_file = ""

private

Definition at line 1057 of file inclusions.h.

Referenced by Inclusions(), and initialize().

◆ inclusions_rhs

template<int spacedim>

ParameterAcceptorProxy<Functions::ParsedFunction<spacedim> > Inclusions< spacedim >::inclusions_rhs

Definition at line 1024 of file inclusions.h.

Referenced by get_inclusion_data(), and Inclusions().

◆ map_vessel_inclusions

template<int spacedim>

std::map<unsigned int, std::vector<types::global_dof_index> > Inclusions< spacedim >::map_vessel_inclusions

Definition at line 1037 of file inclusions.h.

Referenced by check_vessels(), get_inclusions_in_vessel(), update_inclusions_data(), and update_inclusions_data().

◆ mpi_communicator

template<int spacedim>

MPI_Comm Inclusions< spacedim >::mpi_communicator

private

Definition at line 1046 of file inclusions.h.

Referenced by initialize(), output_particles(), setup_inclusions_particles(), and update_displacement_hdf5().

◆ n_coefficients

template<int spacedim>

unsigned int Inclusions< spacedim >::n_coefficients = 1

private

Definition at line 1041 of file inclusions.h.

Referenced by get_fe_values(), get_n_coefficients(), Inclusions(), initialize(), and set_n_coefficients().

◆ n_q_points

template<int spacedim>

unsigned int Inclusions< spacedim >::n_q_points = 100

private

Definition at line 1040 of file inclusions.h.

Referenced by get_current_support_points(), get_dof_indices(), get_fe_values(), get_inclusion_id(), get_JxW(), get_normal(), Inclusions(), initialize(), n_particles(), and set_n_q_points().

◆ n_vector_components

template<int spacedim>

const unsigned int Inclusions< spacedim >::n_vector_components

private

Definition at line 1045 of file inclusions.h.

Referenced by get_component(), get_fe_values(), get_inclusion_data(), Inclusions(), and initialize().

◆ n_vessels

template<int spacedim>

unsigned int Inclusions< spacedim >::n_vessels = 1

private

Definition at line 1055 of file inclusions.h.

Referenced by check_vessels(), get_inclusions_in_vessel(), get_n_vessels(), update_inclusions_data(), and update_inclusions_data().

◆ normals

template<int spacedim>

std::vector<Tensor<1, spacedim> > Inclusions< spacedim >::normals

mutableprivate

Definition at line 1051 of file inclusions.h.

Referenced by get_normal(), and initialize().

◆ offset_coefficients

template<int spacedim>

unsigned int Inclusions< spacedim >::offset_coefficients = 0

private

Definition at line 1042 of file inclusions.h.

Referenced by get_offset_coefficients().

◆ reference_inclusion_data

template<int spacedim>

std::vector<double> Inclusions< spacedim >::reference_inclusion_data

Definition at line 1033 of file inclusions.h.

Referenced by Inclusions(), and initialize().

◆ rotated_inclusion_data

template<int spacedim>

std::vector<std::vector<double> > Inclusions< spacedim >::rotated_inclusion_data

Definition at line 1034 of file inclusions.h.

Referenced by compute_rotated_inclusion_data(), and get_rotated_inclusion_data().

◆ rtree_extraction_level

template<int spacedim>

unsigned int Inclusions< spacedim >::rtree_extraction_level = 1

private

Definition at line 1058 of file inclusions.h.

Referenced by CouplingOperator< dim, number, n_components >::CouplingOperator(), Inclusions(), and setup_inclusions_particles().

◆ selected_coefficients

template<int spacedim>

std::vector<unsigned int> Inclusions< spacedim >::selected_coefficients

private

Definition at line 1043 of file inclusions.h.

Referenced by get_component(), get_fe_values(), get_fourier_component(), Inclusions(), initialize(), and n_dofs_per_inclusion().

◆ support_points

template<int spacedim>

std::vector<Point<spacedim> > Inclusions< spacedim >::support_points

private

Definition at line 1047 of file inclusions.h.

Referenced by get_current_support_points(), and initialize().

◆ theta

template<int spacedim>

std::vector<double> Inclusions< spacedim >::theta

private

Definition at line 1048 of file inclusions.h.

Referenced by get_fe_values(), and initialize().

The documentation for this class was generated from the following file:

/github/workspace/include/inclusions.h

Public Member Functions

Public Attributes

Private Member Functions

Private Attributes

Friends

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ Inclusions()

Member Function Documentation

◆ check_vessels()

◆ compute_rotated_inclusion_data()

◆ get_center()

◆ get_component()

◆ get_current_support_points()

◆ get_direction()

◆ get_dof_indices()

◆ get_fe_values()

◆ get_fourier_component()

◆ get_inclusion_data() [1/2]

◆ get_inclusion_data() [2/2]

◆ get_inclusion_id()

◆ get_inclusions_in_vessel()

◆ get_JxW()

◆ get_n_coefficients()

◆ get_n_vessels()

◆ get_normal()

◆ get_offset_coefficients()

◆ get_radius()

◆ get_rotated_inclusion_data()

◆ get_rotation()

◆ get_section_measure()

◆ get_vesselID()

◆ initialize()

◆ n_dofs()

◆ n_dofs_per_inclusion()

◆ n_inclusions()

◆ n_particles()

◆ output_particles()

◆ set_n_coefficients()

◆ set_n_q_points()

◆ setup_inclusions_particles()

◆ update_displacement_hdf5()

◆ update_inclusions_data() [1/2]

◆ update_inclusions_data() [2/2]

◆ update_single_inclusion_data_along_normal()

◆ update_single_vessel_data()

Friends And Related Symbol Documentation

◆ CouplingOperator

Member Data Documentation

◆ current_fe_values

◆ current_support_points

◆ data_file

◆ inclusions

◆ inclusions_as_particles

◆ inclusions_data

◆ inclusions_file

◆ inclusions_rhs

◆ map_vessel_inclusions

◆ mpi_communicator

◆ n_coefficients

◆ n_q_points

◆ n_vector_components

◆ n_vessels

◆ normals

◆ offset_coefficients

◆ reference_inclusion_data

◆ rotated_inclusion_data

◆ rtree_extraction_level

◆ selected_coefficients

◆ support_points

◆ theta